A BDI agent architecture for the GAMA modeling and simulation platform
Patrick Taillandier
,
Mathieu Bourgais
,
Philippe Caillou
,
Carole Adam
,
Benoit Gaudou
Conference papers
hal-02744133v1
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Validation of a morphogenesis model of Drosophila early development by a multi-objective evolutionary optimization algorithm
Rui Dilão
,
Daniele Muraro
,
Miguel Nicolau
,
Marc Schoenauer
European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics , Apr 2009, Tübingen, Germany. pp.176-190
Conference papers
inria-00378037v1
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A new protein-protein docking scoring function based on interface residue properties.
Julie Bernauer
,
Jérôme Azé
,
Joël Janin
,
Anne Poupon
Journal articles
inria-00431697v1
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A formalization of the computational impact of intrinsic plasticity
Jérémie Naudé
,
Stéphane Genet
,
Hugues Berry
,
Séverine Mahon
,
Jeanne Paz
,
et al.
Deuxième conférence française de Neurosciences Computationnelles, "Neurocomp08" , Oct 2008, Marseille, France
Conference papers
hal-00331558v1
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Pattern Matching in Protein-Protein Interaction Graphs
Gaëlle Brevier-Giberti
,
Roméo Rizzi
,
Stéphane Vialette
Conference papers
hal-00199009v1
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A Pseudo-Boolean programming approach for computing the breakpoint distance between two genomes with duplicate genes
Sébastien Angibaud
,
Guillaume Fertin
,
Irena Rusu
,
Annelyse Thevenin
,
Stéphane Vialette
5th RECOMB Comparative Genomics Satellite Workshop (RECOMB-CG 2007) , 2007, San Diego, United States. pp.16-29
Conference papers
hal-00417902v1
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How Pseudo-Boolean Programming can help Genome Rearrangement Distance Computation
Sébastien Angibaud
,
Guillaume Fertin
,
Irena Rusu
,
Stéphane Vialette
4th RECOMB Comparative Genomics Satellite Workshop (RECOMB-CG 2006) , 2007, Montréal, Canada. pp.75-86
Conference papers
hal-00418258v1
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A Combinatorial Framework for Designing (Pseudoknotted) RNA Algorithms
Yann Ponty
,
Cédric Saule
WABI - 11th Workshop on Algorithms in Bioinformatics - 2011 , 2011, Saarbrucken, Germany
Conference papers
inria-00601060v1
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Asymptotics of RNA shapes
William Andrew Lorenz
,
Peter Clote
,
Yann Ponty
Journal articles
inria-00548861v1
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Fast Inference of Individual Admixture Coefficients Using Geographic Data
Kevin Caye
,
Flora Jay
,
Olivier J.J. Michel
,
Olivier François
Journal articles
hal-01676712v1
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Artificial Evolution, 13th International Conference, Evolution Artificielle, EA 2017, Paris, France, October 25-27, 2017, Revised Selected Papers
Evelyne Lutton
,
Pierrick Legrand
,
Pierre Parrend
,
Nicolas Monmarché
,
Marc Schoenauer
Books
hal-01910443v1
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Mining for recurrent long-range interactions in RNA structures reveals embedded hierarchies in network families
Vladimir Reinharz
,
Antoine Soulé
,
Eric Westhof
,
Jérôme Waldispühl
,
Alain Denise
Nucleic Acids Research , 2018
Journal articles
hal-01745345v1
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Heterogeneous Graph Mining for Biological Pattern Discovery in Metabolic Pathways
Alexandra Zaharia
,
Bernard Labedan
,
Christine Froidevaux
,
Alain Denise
SeqBio 2016 , Nov 2016, Nantes, France
Conference papers
hal-01745390v1
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Computational Discovery of Dynamic Cell Line Specific Boolean Networks from Multiplex Time-Course Data
Misbah Razzaq
,
Loïc Paulevé
,
Anne Siegel
,
Julio Saez-Rodriguez
,
Jérémie Bourdon
,
et al.
Journal articles
hal-01897020v1
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Protein-RNA Complexes and Efficient Automatic Docking: Expanding RosettaDock Possibilities.
Adrien Guilhot-Gaudeffroy
,
Christine Froidevaux
,
Jérôme Azé
,
Julie Bernauer
Journal articles
hal-01071876v1
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Search, adapt, and reuse: the future of scientific workflows
Sarah Cohen-Boulakia
,
Ulf Leser
Journal articles
inria-00638043v1
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SPI-DNA: End-to-end Deep Learning Approach for Demographic History Inference
Théophile Sanchez
,
Guillaume Charpiat
,
Flora Jay
Paris-Saclay Junior Conference on Data Science and Engineering , Sep 2017, Orsay, France
Conference papers
hal-01679385v1
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Hypothesis: Local variations in the speed of individual DNA replication forks determine the phenotype of daughter cells
Vic Norris
,
François Képès
,
Patrick Amar
,
Ina Koch
,
Laurent Janniere
Journal articles
hal-01672912v1
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Automated prediction of three-way junction topological families in RNA secondary structures
Alexis Lamiable
,
Dominique Barth
,
Alain Denise
,
Franck Quessette
,
Sandrine Vial
,
et al.
Computational Biology and Chemistry , 2012, 37, pp.1-5
Journal articles
hal-00641738v1
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Interactions of intergenic microRNAs with mRNAs of genes involved in carcinogenesis
Assel Issabekova
,
Olga Berillo
,
Mireille Regnier
,
Anatoly Ivashchenko
Journal articles
hal-00736694v1
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Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation.
Julie Bernauer
,
Xuhui Huang
,
Adelene y L Sim
,
Michael Levitt
Journal articles
inria-00624999v1
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Expected distance between terminal nucleotides of RNA secondary structures.
Peter Clote
,
Yann Ponty
,
Jean-Marc Steyaert
Journal articles
inria-00619921v1
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Concretizing the Process Hitting into Biological Regulatory Networks
Maxime Folschette
,
Loïc Paulevé
,
Katsumi Inoue
,
Morgan Magnin
,
Olivier Roux
Conference papers
hal-00704569v2
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A Rigorous Runtime Analysis for Quasi-Random Restarts and Decreasing Stepsize
Marc Schoenauer
,
Fabien Teytaud
,
Olivier Teytaud
Artificial Evolution , Oct 2011, Angers, France
Conference papers
inria-00625855v1
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Interrogation et gestion de données bio-informatiques pour la biologie moléculaire
Sarah Cohen-Boulakia
,
Patrick Valduriez
Techniques de l'Ingenieur , 2015, Interrogation et gestion de données bio-informatiques pour la biologie moléculaire, TIP140WEB, pp.BIO7055.
⟨10.51257/a-v1-bio7055⟩
Journal articles
hal-01160897v1
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Maximum expected accurate structural neighbors of an RNA secondary structure
Feng Lou
,
Peter Clote
Proceedings of 1st IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS) , 2011, Orlando, United States
Conference papers
hal-00783862v1
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An Algorithmic Game-Theory Approach for Coarse-Grain Prediction of RNA 3D Structure.
Alexis Lamiable
,
Franck Quessette
,
Sandrine Vial
,
Dominique Barth
,
Alain Denise
IEEE/ACM Transactions on Computational Biology and Bioinformatics , 2013, 10 (1), pp.193-199.
⟨10.1109/TCBB.2012.148⟩
Journal articles
hal-00832110v1
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An unbiased adaptive sampling algorithm for the exploration of RNA mutational landscapes under evolutionary pressure.
Jérôme Waldispühl
,
Yann Ponty
Journal articles
hal-00681928v1
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Exploitation des algorithmes génétiques pour la prédiction de structure de complexe protéine-protéine
Thomas Bourquard
Intelligence artificielle [cs.AI]. Université Paris Sud - Paris XI, 2009. Français.
⟨NNT : ⟩
Theses
tel-00782396v1
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Maximum expected accuracy structural neighbors of an RNA secondary structure.
Peter Clote
,
Feng Lou
,
William A Lorenz
Journal articles
hal-00783859v1
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